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Abstract Melanin-based plumage coloration in birds is shaped by pigment composition as well as melanosome morphology and distribution, however, the ways in which these factors together modulate observable color remain poorly understood. We investigate this relationship in the Capuchino Seedeaters (genusSporophila), whose recent, rapid radiation driven by sexual selection resulted in 12 species with diverse coloration patterns. Using scanning electron microscopy (SEM) and micro-computed tomography (µCT), combined with a novel application of Fontana-Masson stain to image melanosomes at high resolution, we characterize melanosome distribution and morphology in several variably colored plumage patches across Capuchino species. Melanosome morphologies followed patch-specific patterns that did not directly correlate with coloration: crown feather melanosomes were larger, more elongated, and had greater percent eumelanin content than those in belly, throat, or dorsum/rump patches. We also observed that dorsal patches had more total melanin than ventral ones, with pigment and coloration patterns suggesting possible signaling and photoprotective roles. More generally, we show how the patch-specific coloration of male Capuchinos is accompanied by differences in melanosome morphology and melanin composition and abundance. Our work highlights the challenges that remain in understanding how the nanoscale mechanisms of melanin-based pigmentation translate into macroscale plumage coloration. 

Avian diversification has been influenced by global climate change, plate tectonic movements, and mass extinction events. However, the impact of these factors on the diversification of the hyperdiverse perching birds (passerines) is unclear because family level relationships are unresolved and the timing of splitting events among lineages is uncertain. We analyzed DNA data from 4,060 nuclear loci and 137 passerine families using concatenation and coalescent approaches to infer a comprehensive phylogenetic hypothesis that clarifies relationships among all passerine families. Then, we calibrated this phylogeny using 13 fossils to examine the effects of different events in Earth history on the timing and rate of passerine diversification. Our analyses reconcile passerine diversification with the fossil and geological records; suggest that passerines originated on the Australian landmass ∼47 Ma; and show that subsequent dispersal and diversification of passerines was affected by a number of climatological and geological events, such as Oligocene glaciation and inundation of the New Zealand landmass. Although passerine diversification rates fluctuated throughout the Cenozoic, we find no link between the rate of passerine diversification and Cenozoic global temperature, and our analyses show that the increases in passerine diversification rate we observe are disconnected from the colonization of new continents. Taken together, these results suggest more complex mechanisms than temperature change or ecological opportunity have controlled macroscale patterns of passerine speciation. 

The tropics are the source of most biodiversity yet inadequate sampling obscures answers to fundamental questions about how this diversity evolves. We leveraged samples assembled over decades of fieldwork to study diversification of the largest tropical bird radiation, the suboscine passerines. Our phylogeny, estimated using data from 2389 genomic regions in 1940 individuals of 1283 species, reveals that peak suboscine species diversity in the Neotropics is not associated with high recent speciation rates but rather with the gradual accumulation of species over time. Paradoxically, the highest speciation rates are in lineages from regions with low species diversity, which are generally cold, dry, unstable environments. Our results reveal a model in which species are forming faster in environmental extremes but have accumulated in moderate environments to form tropical biodiversity hotspots.